Documentation

Flint is a metagenomics profiling pipeline that is built on top of the Apache Spark framework, and is designed for fast profiling of metagenomic samples against a large collection of reference genomes. Flint takes advantage of Spark's built-in parallelism and streaming engine architecture to quickly map reads against a large reference collection of bacterial genomes.

Flint is a metagenomics profiling pipeline that is built on top of the Apache Spark framework, and is designed for fast profiling of metagenomic samples against a large collection of reference genomes.

Resources

- Getting Started with Flint

- Documentation

- Frequently Asked Questions

Documentation

• Overview

• Sample Code

• Partitioned Genomes

• Learn More